Scaffold Ga0114997

Basic Information
Taxon OID	3300009425 Open in IMG/M
Scaffold ID	Ga0114997_10018843 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009425 Open in IMG/M

Scaffold ID

Ga0114997_10018843 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4729
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4729

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)	Depth (m)	79
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

75.235

Long. (^o)

-150.0691

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F037983	Metagenome	167	N
F064200	Metagenome	129	N
F096207	Metagenome	105	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_100188431	F096207	N/A	INTYYEEDDGTNLISILDNSQVPDNLMSGLSTNRAEREFHNDTQTIEVEYSSASLPFTMPSNCSLRRQTHNLNADYSDKGTYNVYVIGTVANVNSLVQDENSSLSCTIPDGYTLAATDSFKLLYNSSDALQSCTLTQQDSFPYVDENLPDTVMHNLLLDKENIWHTFDITNETRTFEIPYVIGGVYPVEPLGANINLMYITETYDSSFNNTNVQNIYVQGRLNDVYAWAKSLKSDITLPIPDNINKPDEVVFEDDGAYVVQESEFVGNDDMDYLLFEDAVEGLDDNRCIILEQELLEDEDYFKFTFDSSDNLTSVKLIGHLQNQMTRSRKVRRRTQIEHNFKYQDAITNLGTLATLVSDSAITVSVPKYDMNGYRYADD*
Ga0114997_100188432	F037983	N/A	MFLHRVLIEDCKVVTRVWWFDPTKLSELKFTRKIHEEINKVFPDETYTYPVNHIYGMNHDDNCIVFHMCSPERDEMKTLERKCELKAQNDVLLGKAYIRYMYDMENKDKYMEVAYRDTENFGQENWPQSYKTGVPTTVRICTVSEFFDEDFNKIYESLLIHGYNNVQAVYDYADTLNKDLPKPIPVDKKLHKDDLFKFIFDMEGNLVKLQLYAHVDRVGIRNKGSNKTEYKADYADCINNLKETEIVIPEYDVNGNPVRSSKPKDNEEYILFPKARGKEYEKVNYKDY*
Ga0114997_100188434	F064200	GAGG	MIYLHRVIVEDSEATWKIYWFNPGILSHRRYIKKIQEEIYKVFPNETYSWADPAHQCFGYHLKDNIIVTNVCGSNDENLHVNKRYVELKDQNEIYYNKDFVCFYYDLDNAKKWSEVYYKRDDNPEVITKTKLDEGLNIEWISEYYNDEFEKTGQNLFITGKCEDIYKWIDKQNVDIPKPFKNPIEMDMDDRPIVDHINTENAIKCEYDTEGNLVKLKFFGCVLRTKMKVKGEFSHIELSSGYISSINNSEQTEIVEINYDDYGNRIPSEIIKRIDDYIFFPKARENGEYERVILKDM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114997_10018843

Overview

Ecosystem & Geography

Associated Families

Sequences