NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114997_10001666

Scaffold Ga0114997_10001666


Overview

Basic Information
Taxon OID3300009425 Open in IMG/M
Scaffold IDGa0114997_10001666 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18233
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (38.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006483Metagenome / Metatranscriptome372Y
F011494Metagenome / Metatranscriptome290Y
F014551Metagenome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0114997_1000166612F006483GGTGGMSYINSNCTYTQNYSEGTYTFTGPCRVTGDSYTVTIPGSELFDLNQGLPVQDALKSLDREQREFVMSGTSPEGWEKLFGKKP*
Ga0114997_1000166618F011494N/AMRKYSVVDGQGVVQSFTQNVGDADHAALNAAIRLADQVGEDVVECHADGSREVVWSIDDANEDSDGFNSDAEADGDALASAGYGTDEDYGCFDSGD*
Ga0114997_1000166633F014551N/AMIFVMRYMFKFQYNPARHEGEENHANHVYDYVGVIVDHFRNTTEGESFSGVTVELHDNNGATGQTRRFRFDRMINVENLINKAQAMHSNRI*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.