NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115548_1006348

Scaffold Ga0115548_1006348


Overview

Basic Information
Taxon OID3300009423 Open in IMG/M
Scaffold IDGa0115548_1006348 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5476
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050336Metagenome / Metatranscriptome145Y
F052939Metagenome142Y
F096206Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0115548_100634810F052939N/AMETAIKMNIEQKILEQIWDTLMQNNKYPDHFNFATDLRYDHSINYNPDNPTINLVVLKAGRPTTYKISINEVKNEIIT*
Ga0115548_10063484F096206GGGGGMSVSYDFSKCKNKAKDLQKFSYYICSYMMTIGMDEITEKNYLEVYARLRMLDTSILALGNDGDGEPWMNIDMLQQLIGATFGGRHINVESRAKFSSRMLRGTIKAAEEKLAKETEEVA*
Ga0115548_10063489F050336AGGAMDNSMTLDQAKQKVLDMNNETLENFVNQRKGNDSELSNFARNELADRKSLNAWQDGSLINMDAINKLSLGDLERVAKILDKVK*
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