NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114998_10035783

Scaffold Ga0114998_10035783


Overview

Basic Information
Taxon OID3300009422 Open in IMG/M
Scaffold IDGa0114998_10035783 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2733
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011113Metagenome / Metatranscriptome295Y
F022980Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0114998_100357834F022980N/AMFLTQVRRHNDQELYAWAISLLTDLKDAGSTFTAHYIGYGQWTFGDENEYKDNIINLKNLISKSGKTIIFCFDFTLHDNRKEIIQIMEENKDAELLWIGAEKDPFHHPRIDCVFWPADMLLQNKEYRKFDDVEKEPSEQRHWISTSLGIRPHRIYAASLLKGLGLDQTGDLRIKTVSRSGKKSPLVSEALAQGNGNAPDGIPDLPLYVENKWKLSKEIKDISEESNKGYEKLIQRKWWGSSLFLFSHYMALGFNQNNNAANFDKNLRHLYKDKTLEVVNETSHGYDPIFVTEKFMNAVIGLNLVIMNGPAGTVRLLEALGWNSCRHVINHDYDDIKNPIVRCEEAIRLNSKLFSDNVYCNNIWQDCLPILRTNSEWARDRLHNLILKTCEEQVKKSYKQ*
Ga0114998_100357837F011113AGTAGGMATEKLKFKLELHATMWDKSPHVEILINDKSYFKGDVTSTNDKSQLI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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