NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114994_10005005

Scaffold Ga0114994_10005005


Overview

Basic Information
Taxon OID3300009420 Open in IMG/M
Scaffold IDGa0114994_10005005 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9648
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004881Metagenome / Metatranscriptome420Y
F008648Metagenome330Y
F046020Metagenome152N
F096067Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0114994_100050051F008648AGAAGMINSFKTYLTEARGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGKGIKSISRMEGKKKQISAFFEMQSRYMDIGVATQGGVHSVLEMDADVLLSASGDVMSHLDQKGRRWTSISDLKETSRFVKFGAVEKDLQKMFDPLVKKYLKKGEFQENATVWELWRMAE
Ga0114994_1000500511F046020N/AVWVSIILFTFSLNAQIDQHFKSKELCWEFYEKHPLLYRQIDEAFPKDYYVRLYNSDEHGLVWITCEKLSDLRGNDNSKFPLNVPLPTPK*
Ga0114994_1000500512F096067GGAMKEKDNNIQIFINKKEMLYSRQNMITAINTFLLYFTNSDLDELNDRCKSLKEHRHQQEQQANLEENRTPILSNRWDT*
Ga0114994_1000500516F004881AGGTGGMSNNLYKVCSNPNDSIDKSLCILVQDDSPFDGAVIRYTTFKINEQELTGDDIACQYKYEIEIPPHDVGMEISEEAGIEFEKNLGEWLIEIIQQQMDEYAAKDRNLNT*
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