NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114982_1010865

Scaffold Ga0114982_1010865


Overview

Basic Information
Taxon OID3300009419 Open in IMG/M
Scaffold IDGa0114982_1010865 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3216
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011754Metagenome / Metatranscriptome287Y
F014503Metagenome / Metatranscriptome262Y
F031870Metagenome / Metatranscriptome181Y
F042301Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0114982_10108653F042301AGGAGGMVKEGTRWEGNGKDRFHVIHVVEIDGHTWVHYIKENAPEDSNREYSCYLESFLQRFRSVPE*
Ga0114982_10108654F011754GAGMKIGFSLGRCIRDIVNGKVDLDDVAFIITATNIREKEQLAPVINDYMFRDDYLYGLDEAECHRIADELWESNKLLQPRRQGLHRHKQPANSVWVDMFPTELSENQSVKTAWDNYRFMIHMVENVDTDALEHFK*
Ga0114982_10108657F014503N/AMNTRIHHWGFQDGVTPINPGNPFGESIPPRGWFCWAYPKDDHEFKEWMSRMCPGADITHRFNSGDPMWTVYINDDTEATLFQLRWM*
Ga0114982_10108659F031870N/AMQDYTDYMVLPCGGVAYYDEPTNGMNYFCAQCNCIVGSDQVPVSCKIEEKKWELIKLLGGKDWDYFAEPDEFF*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.