NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114982_1000785

Scaffold Ga0114982_1000785


Overview

Basic Information
Taxon OID3300009419 Open in IMG/M
Scaffold IDGa0114982_1000785 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16662
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (79.07%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F004924Metagenome / Metatranscriptome418Y
F010245Metagenome / Metatranscriptome306Y
F045751Metagenome / Metatranscriptome152Y
F085611Metagenome / Metatranscriptome111Y
F093757Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0114982_100078514F045751AGGAGMGTPLYMELGDACRIVQEYAEIHTGNDILEALKDMEFCYDDLDKEDRVAYNMFMAAGRKMFQPA*
Ga0114982_100078518F004924GGAGMRDAILAKLAEVEEMLLEATLDGEQLAEMDCFTEVTGAFNALTEAVEYYVD*
Ga0114982_100078524F085611N/AMNWELYEVWSVDEDGHEDLIDTTKSLKEARSIAEANLTEYYAECIIYAEDPQGELIEVERIT*
Ga0114982_100078527F093757GGAMKTNRDKNKEHDSREILRVRPKQAPYEFKALEDVIRSWVTGNK*
Ga0114982_100078539F010245N/AMKRTARSDSNFVIYVARHNGEEYIGLTRKGSTTVAKAVKERWRKHISRAKHEQRDWVIYNYIRAGNWTDWEHEVICVIRGRAEAYAYERELVKMIEPTLNDQYM*
Ga0114982_10007856F000354AGGAGMAKVNYNQFPSFDLNEACDFFDTEKQTNWKKISKFIIADGQEFVNVMEKEFDFEDTTDSEYAAFEAGVRYALAKMNSALDDADLPLEVAEVDLVESMGFMLVRTDDTPESFVKRVFKKPVLMVESWVD*
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