NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10015448

Scaffold Ga0114974_10015448


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10015448 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5462
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F014116Metagenome / Metatranscriptome265Y
F083901Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_1001544817F014116AGGAGMADNSADIAKRIILGCVAEGMTIEAACTSAGKSMKTYEYYRRTDKIFTDKVD
Ga0114974_100154485F083901GGAGGMNKQVSGRAAIRHRNYRRARDRALVRLAQLYPDTYKQLLGIERSFDEQEGKKWIGIDGLTNLTVGTHTRANGADAYVNTRDESTNQGNNGGEA*
Ga0114974_100154487F000821GGAMNEEYLAAKANLCLNQAEIDLQQQEIARAIKNLKRANLALYRLGLVREGEADE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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