NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114969_10044906

Scaffold Ga0114969_10044906


Overview

Basic Information
Taxon OID3300009181 Open in IMG/M
Scaffold IDGa0114969_10044906 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2979
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F004840Metagenome / Metatranscriptome421Y
F007263Metagenome / Metatranscriptome354Y
F011299Metagenome / Metatranscriptome292Y
F013527Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0114969_1004490611F001562N/AMEKTQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILECCDPIAFAIGLVEHEDYLAEMDNE*
Ga0114969_100449063F011299GAGGMMTRKDYVAVAEILKYASDKTHPALFSKIVNDFAEMFAKDNERFDITRFHKASGYNVPNFTSR*
Ga0114969_100449064F013527AGAAGGMEQYEFLTYITVEAESYDEAIDVFQFQLEYGINKDNVYVADIKQLTNNESAEV*
Ga0114969_100449065F004840GGAGMYKITVAYDSNAPHWQHDYSDEMKAWQAFFQFTDWGTANEYSTVNIYTPELVCYTKVFYREGRRVVTK*
Ga0114969_100449067F007263AGGMIKEYLDENEFYFIKDQIKIHCDEQQFVHVCKAHGEQQGCYYCEFDYDKKCECEG*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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