NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114979_10095836

Scaffold Ga0114979_10095836


Overview

Basic Information
Taxon OID3300009180 Open in IMG/M
Scaffold IDGa0114979_10095836 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1837
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048101Metagenome / Metatranscriptome148N
F048121Metagenome / Metatranscriptome148N
F062446Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0114979_100958362F048101AGAAGMKKFKNIKEFLETCSEGEKEYVYDLYNNASVADLIDLLFEHLPADETIKEIEEYREELEWDDNEAKKSNKLNRKCDCDFVGCQGC*
Ga0114979_100958366F062446N/AMTFSIKRIIGFVLYCLFWILLAYLFIGCVNTSYKTIPSAMSEDAQDYPTKYNMMDSQDGRRNPNAQVNIFGATY*
Ga0114979_100958368F048121N/AQTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGAVVSVSVK*
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Institute for Fundamental Biomedical Research
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