NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114979_10007935

Scaffold Ga0114979_10007935


Overview

Basic Information
Taxon OID3300009180 Open in IMG/M
Scaffold IDGa0114979_10007935 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6937
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (45.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011914Metagenome / Metatranscriptome285Y
F016774Metagenome / Metatranscriptome244Y
F048101Metagenome / Metatranscriptome148N
F062446Metagenome / Metatranscriptome130Y
F082109Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0114979_1000793513F048101AGGAGMKKKIKTKKFKNTKDFLKTCSEDEREYIYDLYNNASVSDLIDLLFEYLPAHNAIKEIKGYREEVKEEMEWDDAEAKKLNKRKCDCDFVGCQGC*
Ga0114979_1000793517F062446AGGMIPKPIRIIGFILYCLFWLALAYLFIGCANVSYKTIPDGMSEDAQDYPTKYNTMDSPDGRRNPNAQVNIFGATY*
Ga0114979_1000793518F082109N/AMWTPIEIFALTFLLNHSPMTSERLSVKEVIQNREAQSLIESVGLRNDSQTN*
Ga0114979_1000793522F016774AGGAMKSNKIKLLSEHLTTLNYWRDQLLALERTHYNRDYEKERTCRNMINKYLDDVLDYNKNIKKNTKN*
Ga0114979_100079355F011914N/AMITDNQIKAMSENELAYLYYALNTEWTSLNMGYDFNWYILKAFKNNTIQKILNKHSANLTDENKGITIEILKKLEANI*
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