NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114979_10000272

Scaffold Ga0114979_10000272


Overview

Basic Information
Taxon OID3300009180 Open in IMG/M
Scaffold IDGa0114979_10000272 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34143
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007747Metagenome / Metatranscriptome345Y
F041639Metagenome159N
F042872Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0114979_1000027237F041639N/AMGRRLNTAILAQAAATGVGLRQARRQLEKGQAVATAKPMKPIAGIGLDGEIDRLESLAATLGEAAKEASGPERSSLIGDYTRVVEALRKMKGDRPDINEAEGKMVPIDEADKILARRTNALIPLLLGMPKRLAPICAHRPAAEIQKEVENEVGQVMRQVQAAL*
Ga0114979_1000027242F007747AGGAGMKDLGKITFGKSRPAPKQVLVDVTYDARTAKALHAFGLKQLKKDQEAVIEYVIKKALEGLVESKKYSK*
Ga0114979_1000027256F042872N/AMNVPSIINQIKEGDRTVGSNPTPSDTYHYNDLRRNGNTAVITEPKKAHYQQLNLNSRGGYDLTPEAFVYHPNPAVCRMWHAQHEASK*
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