NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115028_10819364

Scaffold Ga0115028_10819364


Overview

Basic Information
Taxon OID3300009179 Open in IMG/M
Scaffold IDGa0115028_10819364 Open in IMG/M
Source Dataset NameWetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)727
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location NameOld Woman Creek National Estuarine Research Reserve, Ohio, USA
CoordinatesLat. (o)41.224Long. (o)-82.304Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037787Metagenome167Y
F056707Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0115028_108193641F037787N/AIYSDDPNLPYKTTKLKALYTRSEIDGLFAKWGVKDTYWRWDPDSNEVFVQFKIAEKIDDVPRQFSAKVEAPAIWDRKTRSKAEAINWDISMRVMFWFIKSHLEAAYLLQSSKTVAFLPYIATGDDSRTVKDLIPMLNQLQHLHALPKPSIIIDQEPEVTS*
Ga0115028_108193642F056707GGAGGLKQREIELAAVYMQMFLAGLALNFGANFHELEEITKRALFQVENPSSQ*

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