Scaffold Ga0114996_10170445

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0114996_10170445

Scaffold Ga0114996_10170445

Overview

Basic Information
Taxon OID	3300009173 Open in IMG/M
Scaffold ID	Ga0114996_10170445 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1778
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.2588	Long. (^o)	-156.0227	Alt. (m)		Depth (m)	208
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055187	Metagenome / Metatranscriptome	139	N
F070553	Metagenome / Metatranscriptome	123	N
F084710	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_101704451	F084710	GAG	MKNEMNNEIVNPIDNGQVITSEVIVSCCGCNEEVRITREEADEWTDTDWFMCHECE*
Ga0114996_101704453	F055187	N/A	MRNVKGKGIKSPAELVGLKPFKDAKLLRHEAIERMKRRMKRNLKEAQEKARLAQPYVRDADAPSFDGRWLG*
Ga0114996_101704454	F070553	N/A	MLDNFDAVAKLFEMNKQFRKIIKELVANGFGVKQTQKGFRIAPPRECKNQRVYFTHGGEACLHPIRRDFVRDYGYRINFKK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.