| Basic Information | |
|---|---|
| Taxon OID | 3300009173 Open in IMG/M |
| Scaffold ID | Ga0114996_10106929 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2365 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 75.2588 | Long. (o) | -156.0227 | Alt. (m) | Depth (m) | 208 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006865 | Metagenome / Metatranscriptome | 363 | Y |
| F010325 | Metagenome / Metatranscriptome | 305 | Y |
| F037421 | Metagenome / Metatranscriptome | 168 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114996_101069292 | F010325 | AGGA | MLRKEMVSEKLDQLQLAVERLKSNLVVPLDPSDVGTPYSVIKQQLQHIEDQVDNLINLIQLEDD* |
| Ga0114996_101069294 | F037421 | AGGAG | MSNKPEHITYFRELIRKLKELKISADTGEIVVPNDDEDVLAFNELEIPFHPAMFDKMSSEEKEALFIWLNKENMPQA* |
| Ga0114996_101069295 | F006865 | N/A | MGKINRIIKINDVLYECLGTMSVKGTEEKGTEFWKKQWGADNVLRNGNDYYYCRTVIDAEFEDI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |