NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114996_10056536

Scaffold Ga0114996_10056536


Overview

Basic Information
Taxon OID3300009173 Open in IMG/M
Scaffold IDGa0114996_10056536 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3504
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F013820Metagenome / Metatranscriptome268Y
F015741Metagenome / Metatranscriptome252Y
F022754Metagenome / Metatranscriptome213Y
F027864Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0114996_100565364F013820N/AMKMVPTIVGLIDKFMPGGKTYALMGLGVLMTVCQMGGWHTFSAEAWGLLGIGGAATWKMGTDREKLAAKK*
Ga0114996_100565365F022754AGCAGMNELIITIMLVIPSPHKMVDWEVNLVPTQVQLTHEAGLQVSYNATPVPCTFRPRNKNEMVFKSPSNYCYSIDDLSSPRFVRHKNYWHKIKLGD*
Ga0114996_100565366F002078AGGAGMDIAAIFEGQGWFAIVGQIVLVFTAVTGALPDKFVQKIPVLGTIWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDEAKAKVRVRAGMPDVLDGM*
Ga0114996_100565367F015741N/AMGCSFPIAELIPPAFNFALGFYDHNDYYSKECLWYDEIRLNDDTKKWLLESDPPEIVSEDLSKVSRNNDLYKEVCKEHKSMADKLKGKAERIID*
Ga0114996_100565369F027864N/AMNKKYKVHKHRNLVYVIEKKINGKWGLEWDFGCYLTYNVAEQVMKDFDRYNKCPEDYRLVSYISEKPQKG*
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