NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114996_10055266

Scaffold Ga0114996_10055266


Overview

Basic Information
Taxon OID3300009173 Open in IMG/M
Scaffold IDGa0114996_10055266 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3553
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054093Metagenome140N
F059940Metagenome133Y
F103076Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0114996_100552662F103076AGGAGMNVETLKDYRLTSDEWNLIPGIAAGHMTYERKQAHVDMLVLAGLVEHTDGESLALTPDGEEAAAAIDMIFDWDDFALATDEPAKVNAMEEALARPERLTVGSLVRHVRTGGIGLITEHTMWDADHGAFRVNFVKPVAMSDLTSQLIDNITDRHDTFERV*
Ga0114996_100552665F059940GGAGGMDIQNTTREETALEAASTNCEVLIAQLATWAQIKSGNTEPEAEDFMLVTLATMTVPAEA*
Ga0114996_100552667F054093GAGGLKYYVSKTHVALDDDGRISAYETVLTRPAPLKATQEALRRYKAIGIIPIHICEHPKNGRRYGKLDRAAVKRRGKARKLTLADVAPALAELEAERDKS*
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