NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114996_10046972

Scaffold Ga0114996_10046972


Overview

Basic Information
Taxon OID3300009173 Open in IMG/M
Scaffold IDGa0114996_10046972 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3938
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000497Metagenome1075Y
F013138Metagenome / Metatranscriptome274N
F015799Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0114996_100469721F000497N/AMKNITTNNKSEKIVENKIALSFREYASKRVLFRLVNNKRNKSKSYDIYEKAKLSTNVELAFNNSYRKIDIEYDTTKNNRFKKVNLLIDINSYIDKSKKNLYLDLLNSNDTFIKENKVSNEIIENNKYFRNLVNSL*
Ga0114996_100469725F013138GGAGGMSNPFKRQSISNHNTKNYSVEDVKKANARFYEKNPAAIEPAAMIKKAMQNPNDEVVLEQTRQENEMENFIGKIKITGGIY*
Ga0114996_100469726F015799N/AMTKTQTVTRTPVKYNSSGAAAGFGPEAHPPKQDPSAANTIQDKTKGNSDYNADNRAFISKLKR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.