NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114996_10046349

Scaffold Ga0114996_10046349


Overview

Basic Information
Taxon OID3300009173 Open in IMG/M
Scaffold IDGa0114996_10046349 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3971
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F005848Metagenome / Metatranscriptome388Y
F032859Metagenome179Y
F097373Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0114996_100463493F005848GGAGMLPVQRTYAATIGALGTPVFMVDNQTTLNSFLTLTPNVLQDVVNLIDPAATQLLQYTLIKNGNATSVRCFSSAISATTAGRVPIGPVSMSSGSYQWQAVQTVGALFNGQILVRYGSPLN*
Ga0114996_100463494F004537AGGAGMPFSNNIVNNYQLNSGNVPLLYPVRVICAAGATTGISFPDQFLGRAISLKISNNDSANAASYDYNLNGQFQNLAASNFSTVDNTVVNYLTIIAGAAGTTLVEAQVLPASRTEVPIEVQV*
Ga0114996_100463495F032859GAGGMSFGGGGSGGSSTVSAHTHNSALSGDGGSLSTTLTQIADSNLYSRIVAGA*
Ga0114996_100463498F097373N/AMGSQKERFERLTVLAKLKKLHEEDEISEVLSRHLLEDHMINHWYLGHQTRQDYMQILFREGFRNER*
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