NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114995_10012164

Scaffold Ga0114995_10012164


Overview

Basic Information
Taxon OID3300009172 Open in IMG/M
Scaffold IDGa0114995_10012164 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5333
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002602Metagenome / Metatranscriptome544Y
F004614Metagenome431Y
F031562Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0114995_100121643F002602AGGMKNTDQIKALAIAIEEKDNIIRNLSAELGNLEVQIAEYRQIVKELSDKLELYESKYGTVFKPSRNS*
Ga0114995_100121644F004614N/AMRMNRQQQHRAYSHHDHDIDSIDEEFWPMMGILFTIWGAWTGVVHFIDWLTVDAIIWWAEPLTIVPFVFLLVMSERYNSLNPLHWWPMVWGYKIKLPDDERITIYPINGEDLVKEHGGPLHIHIVDYEHIKFRRKRDAVMYALRNF*
Ga0114995_100121645F031562N/AMKTILLNGCSFGECWNTTDSFIRSLGCDKVVNISKVATSFQRTCRSTIEWIAQNGNPEFVIIPITFCHRWELAITQEEDQLDGSWFPLQRKELIDEHKDKLCLDVDVDKLKNMLDLYYGSIPTVKTYWDKMFTEIVMLSAFLENKRIRHLIFDMCNGFDKKHINGYKGFDKLKLIESNKNVLNLFNFCGNRYM*
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