Scaffold Ga0105102

Basic Information
Taxon OID	3300009165 Open in IMG/M
Scaffold ID	Ga0105102_10001576 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7501
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7501

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (23.08%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

near Jamestown, North Dakota

Coordinates

Lat. (^o)

47.0956

Long. (^o)

-99.1001

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105102_100015761	F001018	N/A	MSQITQAKLKDLSIIKLYEHYAALEKSLPLLTPESQELAKAELESCANLRSEKVDRIYYAMAAHEDALERVKKEGDLVAQAKRHHESQLNQLKNLVSWLRRSLPLDSNRIQGRNYEFVLSRKKELTVEVTSDPEFWHTDERTKYCIQQEVTTTKRIVVRSMSGEVLSDRTEPKTKLETLPNLDAIRDAYQNGDHLPQGVKVEQQYAIRKNRLFSAKRMEAQAPEYFGELLQESDPAD*
Ga0105102_100015762	F013517	N/A	MFESLFATVLPVLKDILWAAAGALLTYALNKFQSQFN*
Ga0105102_100015763	F002738	N/A	MSIDTYGLSSEQYTEFFHKNIRAAAKLYLDTCNILTGEGVGNVDFKTVSEMYQEAVYTTNDDCRRYQKSNNPAALKENDVYGLVPSHQEIIDMIETLVTYTEALDAKLQALTDYVSNLVTVTTAGLEGIATTLDDTVD*
Ga0105102_100015766	F002333	N/A	MSTQLQTELNAAQACIYTRTSIGRAYQDFDDTGIAGIYLRGDDCLVVRHDGSEQAYSRELIRKAFQHYTNRLKDFFSYLGPNYRGPSVWHHNAYILFKGWNYTHALGHLSSNAKLQTHWADKFIHVSDPTKVTTLLQSDQTDLGYLVAPDGMRLADRPFNLDSELDEEQEQHAMFGEPSCSCGSFQRQLNNLSAFQEEIQGFKPWCIHLTWFNKYRELLCKRTEVRNSSPSGTPDKCVAWWYAPPVDHTSDGRFVLLHTKSGAQAPLSHWRTYKPKEIFTQNDAWDLFFNMMEAGYAPFPGTSLPQLKAAVKKQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105102_10001576

Overview

Ecosystem & Geography

Associated Families

Sequences