NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105102_10000079

Scaffold Ga0105102_10000079


Overview

Basic Information
Taxon OID3300009165 Open in IMG/M
Scaffold IDGa0105102_10000079 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23056
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (82.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001629Metagenome660Y
F023572Metagenome209Y
F026251Metagenome / Metatranscriptome198N

Sequences

Protein IDFamilyRBSSequence
Ga0105102_1000007916F001629AGGAGMILSQGKLADGLVDDLLHTIHKYDETLYMSTVIGVLELVKQQLINESIENEEDEL*
Ga0105102_1000007947F023572GAGMAYTPKAQRGLYFNINQRRAAGLPPKRKGQAGYPTKAAFIKSARTAKR*
Ga0105102_100000795F026251AGGAGMALAMNKIILANATTNTAGAYFSNVSLTAANAGTVIPAGTYMVFPAANVIVTANNGSSITTLLANNTGGMILSDGVNVFAQSIIAGAGAATALTINGGINANSTYTS*
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