NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114975_10065310

Scaffold Ga0114975_10065310


Overview

Basic Information
Taxon OID3300009164 Open in IMG/M
Scaffold IDGa0114975_10065310 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2127
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006060Metagenome / Metatranscriptome382Y
F038106Metagenome166Y
F068426Metagenome124Y
F083677Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0114975_100653102F083677GAGGMSDTFADMDVEELQSYFSDFHKDYYGFRPRFATPEQWQNRDWLVEHINAIHDAMDELKKTPEGRAELRANGWVIEEKETI*
Ga0114975_100653106F038106AGGAMKLSYQQKEFIMQEMFKMHKTPAGYRSIYKGVPIYNYEVIKEFIDFTKYYVMFRGPRPRLNQSSTRKRDAKAFDVYMRSNRDTLLIRTEREAFERGVQWANNRSH*
Ga0114975_100653107F006060GAGGMLKFEGIATVGDIIRAYDFKPMAGRDDAFIEGVVIDANNNESGFSSYKIKVTVDKFKKYETKVTARNRVEQIAFVPHQTSFHEFDFRVVNLSKV*
Ga0114975_100653108F068426N/AMSKWDFVVLELKSLQKGFEDYQPITELFVEQKLLCGYNIIKSKDQVYTA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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