| Basic Information | |
|---|---|
| Taxon OID | 3300009164 Open in IMG/M |
| Scaffold ID | Ga0114975_10010768 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5704 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (57.14%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000980 | Metagenome / Metatranscriptome | 814 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F004051 | Metagenome / Metatranscriptome | 455 | Y |
| F005741 | Metagenome / Metatranscriptome | 391 | Y |
| F007644 | Metagenome / Metatranscriptome | 347 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114975_100107681 | F004051 | N/A | NGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSDSALVGA* |
| Ga0114975_1001076810 | F001125 | AGGCGG | MGDRANFGFRDRKGDTVYLYGHWAGHRMLENLANAVEHARPRWTDESYATRIAISQLINDEWPSETGWGITINELADNEHKVPVIDWNKATFTLFEEDLQTIVFETSLDVFVNKYSQLEEPAMV* |
| Ga0114975_1001076814 | F007644 | N/A | MEYMKLHLISLNQDLEMNPESINVIDIPGQIYATEHLMSVATDIMNSTNERYE* |
| Ga0114975_100107683 | F005741 | AGG | MANRFRVEIYDANKLNDVTIYSEQGVDKEYLTELVYSNLRKFSGKVNAYVFDNVKKKKTTAMFLDEQTVNKYNLNLKQDTAKQLGLA* |
| Ga0114975_100107686 | F000980 | N/A | MTNYQKYTWICPGDCDALIEYTFKDGYGWPAGVMDLTCRCGTDCILLSVVDATITPSTTTKEEKMETTINEVPASYNSDLVVTYKVIRGYSDAEYATSKITSLEWDLHNGRQAQKQNNVLQDKINTAKDIIAEAYADSSDQDTLRSIAEALGIELTRTVEWTATIEVSGTIELDLLEDYDIEDEITDNLYVDSQSGRIEIADQEVCHVREC* |
| Ga0114975_100107687 | F000311 | GGA | MYFELTAPSQVAYARAIWDAELIGLDPEQCGPLTFNIGTGSIEKVSRIRDKYGLTESYWSDKESTGYKEK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |