NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114970_10003457

Scaffold Ga0114970_10003457


Overview

Basic Information
Taxon OID3300009163 Open in IMG/M
Scaffold IDGa0114970_10003457 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11593
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012098Metagenome / Metatranscriptome283Y
F016389Metagenome / Metatranscriptome247Y
F019997Metagenome / Metatranscriptome226Y
F030064Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0114970_1000345711F016389N/AMKLIRKFAVQGHVIPQSVHSPRGPFPPEVLAGPQMTLEEGHADSLHVGLDDVRFFQCKECHTVLETHELEDHDCSDFK*
Ga0114970_1000345715F030064N/AMTLGIVAGALISLGVLLSPLYKRIKRFMEWMERFMRDWEGEEASPGRDRVPGVMERLNSMDGELSQNGGSTTVKDRVDRLYENQGDVMNKQDILLEAFVEMGERLISIENCLNKSEVTATTPIV*
Ga0114970_1000345716F019997AGGAGMDINTLKSAGATWLRASLAACAALYMSGITDPKTLANAFVAGLLGPAAKFVNPKDPSYGFGKK*
Ga0114970_100034578F012098AGGMPKAHEIGPVFVQVTNFPYEWGSKFFVRGWTQEIDEPFRTATPFIVRLPRYKALVIGRWTGMKSEEEALNGALGRRDVTEDDFSEEAGWTPAPDSDREASSHNLYSRFNNMDGASDVYDWQAYHYVATQSESVGP*
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