NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114966_10000049

Scaffold Ga0114966_10000049


Overview

Basic Information
Taxon OID3300009161 Open in IMG/M
Scaffold IDGa0114966_10000049 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101173
Total Scaffold Genes167 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)142 (85.03%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005167Metagenome / Metatranscriptome410Y
F009327Metagenome / Metatranscriptome319Y
F012098Metagenome / Metatranscriptome283Y
F014843Metagenome / Metatranscriptome259Y
F014968Metagenome258Y
F019092Metagenome / Metatranscriptome231Y
F025484Metagenome / Metatranscriptome201Y
F030064Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0114966_10000049132F009327GAGMDEGIVDELRDPVGTEVDWWLWDDAALAADYDTFVDPIYDVSNQEDGKGRRWNEPFKLPVIMAQQLRGTNIMNERGYYTTDTLRLVVAVADINRLLPAMITDPALHIKDRVVFRDAVFVPTRVLPRGLYKERYSVVTIDCNQVNAEELVNDPQFQDLTN*
Ga0114966_1000004915F014968GGAVIVTLSKEEVRACADIALNRWMMKFGSVDRPNYAGENKKYLEPEIAANVRTIVAEYAVAKLYKQPFTFPFYTNEEHYFRKDFPDVMPCYEVKSVRTKDEIPVFPKDIRPGVILVGARVLDRDYYSEVEVYGWLPTEECTKDEYHYPPENSWRIPIDKFNDTIPG*
Ga0114966_10000049162F012098AGAAGMPKVHTLGPLFVQVTRFPYDWGNKLVVRGWSQEIEEPYRTATPFIVRLPKYHGLVLGRWGAMKEEEEALSGALARREVTYEDFTEEAGWTPATESNRETSIDGLYSRFDFMDGAVNVYDRQTHFDMAEAPERG*
Ga0114966_100000493F030064N/AMTIGIVTGALISLGVLLNPLYKRVKHFMQWMERFMRDWEGEEAAPGRDEVPGVMQRLNKLDGELSQNGGKSTKDTVNKLYANQELVMEAFVEMGERLIAIENCLNKSEVNTPNPVN*
Ga0114966_1000004966F014843GGAGMNVMLSLDGVLSSDSGDPIRAGVMLYYALNINNRVAIRTSRKKEDAEHWLNSHGIINYDDLIDYSYHLEGEDLKKRQFILSRSRAPIEMYVDADPSMCAWVFEEQGIPAIMFMNPGYLAVERRPDAPKKVRQWSDIENSITRVNLAKSKEAANPKELEFWDD*
Ga0114966_1000004969F019092AGGAGMSNVPILGEKPKDQEPMFRLLYCLVCQSLDELPPYDGEPELDHLLAVACENHVFDSGEPHKGKLFVLPLRAWAHQESKREIISQIKGGGSKGLAAIDETFYESRSTFLEDAMSCYQRHNKPKDGCPDWHDNNLMLIPKTEKDRIKEGMGKYKDTPGQKTYLCDFCPVAIGVADRKQKLLGMK*
Ga0114966_1000004972F005167N/AMNAGLDAGATDGKYRKVRPDTEVGTESAATVANRQSLHPFYGYGFVTTEYPGKVNPGK*
Ga0114966_1000004974F025484GGAMDGDGMLSMELQARQIAENATRYNGSAPCPTCGVIMNPVDFMTNRGHCLSCVTQRNAQRVKGKMA*
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