| Basic Information | |
|---|---|
| Taxon OID | 3300009159 Open in IMG/M |
| Scaffold ID | Ga0114978_10035398 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3535 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F001229 | Metagenome / Metatranscriptome | 741 | Y |
| F001900 | Metagenome / Metatranscriptome | 620 | Y |
| F005054 | Metagenome / Metatranscriptome | 413 | Y |
| F073145 | Metagenome / Metatranscriptome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114978_100353981 | F073145 | AGGAGG | MAQSVGNARNILVGASPLFLSNTDINDADYIANAEAGVAVTAAANTVGVPAFASGVSYTTSLNAVNQTAGLFGYRNVGFTNNGLQITYNPTYDSVTVDQLLDTAKLFKSAMEVMIATEMSEGTLENI |
| Ga0114978_100353982 | F000258 | GGAGG | VTANYKLDAMLELRKYLWEELYTRGIFDEDDYWSDNLNENIIPIIPVQQSPELNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTVYSTSVADINEIRNYMTDEFRRMDESARDINKWKDLSNKFKFYSIYIADISPTAPSEELQGFFSSEIILEIKYSRITDSDGSSSTLGRFL* |
| Ga0114978_100353983 | F001900 | GGA | MLIQAASGLERMMYANQKGVLKDSTVAQISAYVYYEAAVISKLTTNKPFQNAFGKMMFDQINLDFGNYIDSLARSKPKSLHHVYEWKKSGNKTARLFKLNKTAQLGLSFGINYEFLPSKSMVPASSGRRRHVFANKASIVEQGKPLVIRPKNAERLVFQIDDETIFMPKGASVTVKRPGGTGATNQFTLAHSRFFSGNLVNDSIKRSGFQKLFNSSITKALRVPSNIKKVQYSFSANTIRSQADSALTLSFGGAM* |
| Ga0114978_100353984 | F001229 | N/A | MNLDVYRQSEIQDTETGAIIKEWNYYKTLSCHAKGIISNTATSGSGNKQVFSNKYMDEQVIQIRTSEKLTAREKITNIRDSDNNVIWQEINYPNDTPTVFEVMGTTPMTDPFGRVIAYSSSLKRSENQQIGQ* |
| Ga0114978_100353985 | F005054 | N/A | MAEILINSQSPIVHQIFWNGDIAVADALPIVKIYDVTLDARVSPAVLATTVLATITSTLDENNPGTYSVNVPYALTNRNKTLKVNWEYSVGGVAVVRSDEVQVVTPYIDFNYIQDLGYSTDSSDPSYKSYKELIRAEKYARKQIEEYTGQKFYLYDETVMVYGYEYDTLPLPAKINQLHTLSVNDILLRDNINNIDNWNFPVQISESGYSIRINRAGMVDNTVYTANGMVPPSIHDYSGVFHSGVPYKVFARFGWDKVPENVELATAELMKDYFSKDTVWRNKYVKSISTFDWDFEYRGDAYTGTGNALADNLLADYVLTIKAEII* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |