NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10019998

Scaffold Ga0114978_10019998


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10019998 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4946
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002092Metagenome / Metatranscriptome594Y
F007751Metagenome / Metatranscriptome345Y
F043933Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0114978_1001999811F043933N/AMDIREQCRERATKFAIEYGFTNVSEHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLALSRAD
Ga0114978_100199985F002092N/AMRTTNQKAIDYLEANPIVKNFIKELNEFRKDYYVKADMPNQWKELTVEIGNKFIRLWDGTMCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGSARYGVYGPEYL*
Ga0114978_100199986F007751N/AMNKAEDLKSVIGKDVSQNQSPTCRARLVKVNKVNCIFESVPSLYDKFPKPEFVGVKYKVPNWIAWNSFFY*
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