NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10053136

Scaffold Ga0114977_10053136


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10053136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2506
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007170Metagenome / Metatranscriptome356N
F009888Metagenome / Metatranscriptome311N
F056616Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0114977_100531361F056616AGGAGMAFTKSFGLVGENCVVTIAFGGFQDGSPTAFTANTYTCLAKSVRTSTSVDTADVSALCDTTKKMQVTKASGSIDIELLVDGTQQADGSPIFFNKEGYYCQVVITPGALSAKTFVGIVTATGIGIAAGEAVTETATIMLGANGVTTAWATA*
Ga0114977_100531362F007170AGGMAFEPAVIEQWIYETLSGDTTLMDLLSTSNQPSGYQQGIYNTVAPQVDPVSRRPPQLPYVVFSRAGASGDDEDALCGARVFTFPNYRITVWDSESGAMSMSGIQTIMSRVDTLLDNQTVTSTTPRLYVRRTSTDQTFSLSDGGRTDYGVTAVYRCLTQQ*
Ga0114977_100531364F009888AGGVALIFDLTEDPQQIVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNINTGAAYSFVSGSVTLTKQYSAQGIMSVLNPAAYPTAANIRLTVSFTVSTTVRRFGPLEIEVLAP*
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