NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10018616

Scaffold Ga0114977_10018616


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10018616 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4365
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001424Metagenome / Metatranscriptome698Y
F003662Metagenome / Metatranscriptome474Y
F006063Metagenome / Metatranscriptome382Y

Sequences

Protein IDFamilyRBSSequence
Ga0114977_100186162F006063AGGAGMTDLLTAMHLSVMLLDLRIRMMEAIEREQFDLAMTYHLLILVRTDELDAHKWAMSPKAWAIYETIHP*
Ga0114977_100186163F003662N/AMKTKQATVTIDDQDWIVLDTDEQKDNKVFCALGKPDSTIVWHTWVDINKIVGVV*
Ga0114977_100186166F001424N/AMHSLSTIQEDERVFCHNCVNAEMVEQRQSMPAEQMERHRKVNSKPLQWMFDQAKVKGGWATVTWSEHQCSRTGLAAFPTDIKHRCNMFQTKPSAVESEEWWLT*
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