Scaffold Ga0114977_10009299

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114977_10009299

Scaffold Ga0114977_10009299

Overview

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10009299 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6242
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016247	Metagenome	248	Y
F067259	Metagenome	126	Y
F083731	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000929911	F083731	AGG	MNLKQLLRNAGISNNIIKEVERKAKQTNAQTEQEHQEKAMAMTKMMLNDALRYRKEHGDNTPPSKPKKTIIIPN*
Ga0114977_100092996	F016247	GAGG	MSTYIIEHNYKGSYVMETIAGVEDIDTSIYKDLLGIWVCDSPEEVKAVEDELKRLRNARPS*
Ga0114977_100092999	F067259	AGAAGG	MKKYTHFDLEDAIYKVWQTADDIETLFMYHGDAEKPMTEDEVANALLGLKSLHNMRCWQLMDMSARVFELNQYCTDPKKLAAREAMLGEALDFLNTAEPKVKMKGKKK*

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