Scaffold Ga0114977_10007993

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114977_10007993

Scaffold Ga0114977_10007993

Overview

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10007993 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6710
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044297	Metagenome / Metatranscriptome	154	Y
F085341	Metagenome / Metatranscriptome	111	Y
F089841	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000799313	F044297	AGGAG	MGAMSEISIRLGELESMLYDNGLHYEPFIQECKLLCELGFVDEINCIIHEYENFIVTNEGD*
Ga0114977_1000799314	F089841	AGGA	MNTIYFSKRHELRKDYYVIPFSCSDLMDIDTEVSYRDRTETTQKVLDTIVDRITLALYNQGYILQNVSFRTMSISAIVDEMSTKVSYR*
Ga0114977_100079935	F085341	GGAG	MKYYSISFPGECGQDVVETWSEKQILSSGWYKNWVMMMVQGDKAHLIEDKTAIDDWCVTHWAIEVEKPGWIKD*

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