NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10004899

Scaffold Ga0114977_10004899


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10004899 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8506
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003626Metagenome / Metatranscriptome476Y
F010321Metagenome / Metatranscriptome305Y
F019827Metagenome / Metatranscriptome227Y
F028170Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0114977_1000489912F003626N/AMKEWIAKYQKAIVGTGAVAVLIVCYFQQKELSKLRSEQIKVYNVPYNVDSLITLKDSLYDELFISKVQNGRYELSLENLYEVNPKAGKQFTDFMEHETE*
Ga0114977_1000489915F028170N/AMALKKLMKGLETSLKVEREIHPSTLLGVWFHRFKMRSIQHRIDDIKKELNNRKTKNNG*
Ga0114977_100048993F019827N/AMYSNDNILRGTKRKAYSASKVRKMRSDRLLTKAKKDGVSNDQVQHYLGKLQAAGHMRLGGMTSFDVKSEKTANELSENIINTTTIKFNTHVEKGMGERPHMTGYLTSASDSDKQYKLKGWFNEDGTFRIELVN*
Ga0114977_100048998F010321GGAGMTFEELQRQEVGRLNNALVSQSLQPEDRKLLNQKMFNPKTGELQLFVDNGKGGVKMAAVNIFE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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