NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10000342

Scaffold Ga0114977_10000342


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10000342 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32031
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (30.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056430Metagenome137Y
F058814Metagenome134Y
F099284Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0114977_1000034210F099284N/ALKNIQTKKINNMKETKTAYILAKIKIKGFVKAKNINQLALKLDIKPENLRHIIDAIEVANAVDDKARHNYHDYYFRGKGKKKKGTLILCYKWADETKSVLSDKMNEILGVK*
Ga0114977_1000034225F058814N/AMLTKENGAKVYSIIYLLAFLFYPMFIWIDIFTPLKKETFEYLGKFLFYAGSGFFAIIGLRNINLLTGLLKK*
Ga0114977_100003423F056430N/AMNIKIFKTREQFKQYANELIDDNFWDIKNCSPFKSNPNIPYVAYARYIKKTIHGEDASELRGFKPSQNQKITDRLQEELIKLLTKDAEEIVLENDLFQVVVEKSDGNLQTAIIRLIDYSANALITHEKKHIDPSENIFLYINDHEVYLSKRQTIKINQAIQDKLDEYWAENQTEDEKEATRAEKLWEMNEGR*
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