Scaffold Ga0114968_10037744

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114968_10037744

Scaffold Ga0114968_10037744

Overview

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10037744 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3189
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003962	Metagenome / Metatranscriptome	459	Y
F024501	Metagenome	205	Y
F098901	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100377442	F003962	GGA	MAHKFISLLQLENAKLHGVVRLLGGLVDDMEANCSYEVFEAQWEGLTTYVKGLSEFFCIHQKALQSLQEACPAVWDQDEVDET*
Ga0114968_100377445	F024501	N/A	MKHPEQLDDVGITESYLRKMAKKEGVSYKVAVQIAMEQWGEYSLKLINKMVAEDIKERRRN*
Ga0114968_100377446	F098901	AGGA	MKKKIGKGKFKVEYKQTETFIVDVYANNQKQAEELAGKRFDAGDYQEVGDCEVVVNQVYNVTNTEDPFCP*

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