NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10023185

Scaffold Ga0114968_10023185


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10023185 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4246
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006891Metagenome362Y
F009066Metagenome323Y
F031026Metagenome183N
F048834Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_100231851F006891AGCAGVEVSADQVAELSERLALAREAIARIETRQTVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELLKRRLSF*
Ga0114968_100231853F031026GAGMRGGLNALLLISALALCSCATTQTQDGPPPSPDSISYFIYQWDKAERTNPPCPQSYRDLFAESLKALSDSLAETQRERARQ*
Ga0114968_100231855F009066GGAGMSPEHEKHLAGILSDLVKDVDAKYRKGQEEHGGALWRRPVWKDAWEECLDLCTYLHTLRMQLSVIADLALLGASDESVAASSSRESCRQILAVLEGFPSAVDKK*
Ga0114968_100231857F048834AGGAGGVAIPGVDWAAALDAYVAGDREEVVPPGWFTKIDIAKLWGKTPVYTNKVLTRMMKSGGAERKVFSIRIKICDRGSKIGHCRRVPHYRLTPSKSRKS*
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