NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114968_10004996

Scaffold Ga0114968_10004996


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10004996 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9855
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (54.84%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011914Metagenome / Metatranscriptome285Y
F016774Metagenome / Metatranscriptome244Y
F032572Metagenome / Metatranscriptome179N
F048101Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1000499614F048101AGAAGMKKFKNIKDFLKTCSEDEQEYIYDLYNNASVADLIELLFEHLPAHNAMKEIKGYREEVKEEMEWDDAEAKKLNTRKCDCDFVGCQGC*
Ga0114968_1000499623F011914N/AMITDNQIKAMSENELAYLYYALNTEWTSLNMGYEFDWYILKAFRNDMIQLALNKHSANLTDENKGITIEILNKLESNI*
Ga0114968_100049963F016774AGGMTPKKNKIIINKEQLESLNHWRDQILKMEKSYYSKDVEKERTCRNMINKYLDEVLDYNKNIKDKPKKQV*
Ga0114968_1000499631F032572AGGMTTYKYIADYINKPTIFCYILDRVVNNNPYLFTGEYNKKLLNKKVWMAKQVFPHCEPTQYTYFKTFKEAKDTLNRWGAKWERV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.