Basic Information | |
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Taxon OID | 3300009155 Open in IMG/M |
Scaffold ID | Ga0114968_10004662 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10194 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (73.91%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006985 | Metagenome / Metatranscriptome | 360 | Y |
F011142 | Metagenome / Metatranscriptome | 294 | Y |
F035668 | Metagenome / Metatranscriptome | 171 | Y |
F059759 | Metagenome / Metatranscriptome | 133 | Y |
F068428 | Metagenome | 124 | Y |
F077016 | Metagenome | 117 | Y |
F102815 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114968_1000466211 | F077016 | GGAG | VPTNSAEQVREFYRKQGEQRERERIIELLKQQQVIRNCGATGKLVFVNCNNLDVLYLKDDLLNELSNE* |
Ga0114968_1000466213 | F102815 | AGG | MRSPEELFLEAIEAYKAWVACGKDFVNHANLFDVWDDAVTAYGQSVFLERNRAVHQVLQGLELIK* |
Ga0114968_1000466215 | F059759 | N/A | MTKQQIWDLLEIYREMQIANTMEQYNNAFEQLHDFIENNCLKAGA* |
Ga0114968_1000466218 | F011142 | AGAAG | MAQVKVTGKVNKVFGANNQGLSLVESYKSATGEDYTRTYTVWYAVAHNIELEAEITVVGQLSAKIEDFEDKTGKPGRKVKLDINNAQTLEAPKPAATDLPF* |
Ga0114968_100046622 | F006985 | N/A | MIRETCSCGAEFETDDREAIELIKSWRRTHKHSNRAEKPVERDSSLLSNTEVSLGFQAIYDPLKEELE* |
Ga0114968_100046624 | F068428 | GAG | MLEDLQLPKRNTPCRIRTIKTELNDKDAVILEQAVMNPEWPYKTLSNELYKRGTKVSDAAIKHHREKRCSCWKD* |
Ga0114968_100046628 | F035668 | GGGGG | MSCNNCQDGCKCSRVNSINIFSKDYKAGQAHGQRDEHTRTSDALIELERSGVITNAQMQAILDLILEKLTDAMDIP* |
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