NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10000542

Scaffold Ga0114968_10000542


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10000542 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28034
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (78.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001848Metagenome / Metatranscriptome626Y
F003522Metagenome481Y
F004547Metagenome433Y
F004950Metagenome417Y
F007861Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_100005421F004547GGAVKVLAYFTVLVVFWLFLIDAPYAKELVKEMSMATESGEIVLTSEECIFTKMGLQGYDYAAYATDKGHPNHEGCWKSDNYEGKHAVYIYFPEINQTAVFDAKLFKPKATI*
Ga0114968_1000054223F007861AGGAMADKSLEEVKRGEQASKILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNRLVIALQLLNQINKQLTDVMQTGKLAAIQTDRPKFKIFG*
Ga0114968_1000054233F003522N/AMSNKDKIIAYLTEPKTIKAIAEHVDANYHTIKNLLVAMKMEGDVHSFKDNDNRLMHYYIPQPHPLQAIFGHTANFTDDQIKSITIHNADDSKHNLQHNTTRETFGESITYTLGKYD*
Ga0114968_1000054235F004950AGGAGMGKGSGRRPLLISEQEAQDNWDKIFKKKKNSDDVSPHTYEYELNKSIGDVEKRFIDGTSKPNESQFNGN*
Ga0114968_100005428F001848GGAVILHYIPKDQLRQHWDYVKHGLELVRAKGHTQWIVEDVYCDCYENRSMLFIGQRNIDISTNASELVGFVVLQPIGDTLHVWATWSTLNDKTLFQQAFQEIQAIAKQGGKSRVTFSSQRKGWERKARLMGFIPQTWEYKL*
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