NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114963_10144357

Scaffold Ga0114963_10144357


Overview

Basic Information
Taxon OID3300009154 Open in IMG/M
Scaffold IDGa0114963_10144357 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1418
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003691Metagenome / Metatranscriptome473Y
F005299Metagenome / Metatranscriptome405Y
F008359Metagenome / Metatranscriptome334Y

Sequences

Protein IDFamilyRBSSequence
Ga0114963_101443571F003691N/AMTNEFNQFTEVSYNTNRNERPIYRNFAASKLSSAVKPQSIVEFTDFMGRTHKVAVRNNTELKKQMKFFGMLKRESSTIKQIISQYPIKLGKVEKRFLAECKRELKSVLKLTNKQLDIVLA
Ga0114963_101443572F008359N/AMSKSKVNVKSNYDIKKVKRVMRMKSESFEPTTFEVFKVTGPNKFKKYFVSRKDAKSFIDGYTDTKMTLGIVRNIMNEIKVK*
Ga0114963_101443574F005299N/AMSKITNTPTHLQSPIDSPNEIWESKVGYDSANKRMIAKVYKHLYNVMESSTKPTWTEVITEMITEDGRLGQVSINGYYSTIRRNLKDIGVIQNNGRKGMSKGIYWDRFFSDEDWTWFITNTNSGGYGRILR*
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