NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114963_10054889

Scaffold Ga0114963_10054889


Overview

Basic Information
Taxon OID3300009154 Open in IMG/M
Scaffold IDGa0114963_10054889 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2532
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003304Metagenome494N
F041081Metagenome160N
F058800Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0114963_100548891F041081N/ARAGTMPVHVGTNKERGNKIMIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHCYAKVVNNVIMSKIEISTATQDIKNPSKELLEKADDLLSIQATEDFDAGK*
Ga0114963_100548892F058800N/AMKQALSKLFYFLGDTTSRTLLRAGIGYSLYRTFMLWSLELDEKFDVWKEVKSKRRRKK*
Ga0114963_100548893F003304GGAGGMKQALVTQSFGEDWQKIIDLTRPRMEEYCKRHNTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIVHYAGQSNDLTKLANQIKADDAKLVELGR*
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