NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114963_10010970

Scaffold Ga0114963_10010970


Overview

Basic Information
Taxon OID3300009154 Open in IMG/M
Scaffold IDGa0114963_10010970 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6154
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (38.10%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016774Metagenome / Metatranscriptome244Y
F048101Metagenome / Metatranscriptome148N
F062446Metagenome / Metatranscriptome130Y
F066486Metagenome / Metatranscriptome126Y
F082109Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0114963_1001097011F048101AGAAGMKKFKNTKDFLKTCSEDEQEYIYDLYNNASVADLIDLLFEHLPADDTIKEIEEYREEMEWDDNEAKRSNERKCDCDFVGCQGC*
Ga0114963_1001097013F066486AGGMSKKSSLKVGRFVKKSVYESKVDMDNITHNYFLNLGKSVITDEQFINIGFNYALIRGLGEAKKVKSKKK*
Ga0114963_100109703F016774N/AMPPKKSKIEFLTEHLASLNHWRDQLLALEKSYYSKDTEKERTCSNMLNKYLDDVLAYNKNIKEKPKNKV*
Ga0114963_100109707F082109N/AMWTPIEIFCLTFIFNHSPMANERLSVKEVIQNREAQLLIESVTLRNDF*
Ga0114963_100109708F062446N/AMTFKPIKVIAFMLIVLAWIIMTFFFVGCANVSYKTIPDGMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGATY*
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