NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114963_10000056

Scaffold Ga0114963_10000056


Overview

Basic Information
Taxon OID3300009154 Open in IMG/M
Scaffold IDGa0114963_10000056 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64097
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (18.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016038Metagenome / Metatranscriptome250Y
F052416Metagenome / Metatranscriptome142Y
F065460Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0114963_1000005628F065460N/AVSKFNQKIESLSENYKSIKYTKREFYPKNFNLSEDFVNAFRKEYRRLIDEGLEPKKALIKLNKALLFHTN*
Ga0114963_1000005675F052416N/AMDFIEPRIIASPISGQPVKPVLKTFIRGNKEIVEAHYIDPASGTFIRKGLVSVKDIPSKEQNNK*
Ga0114963_100000568F016038N/AMAANIDLLPTQKSLIDLSELPKNSFNSIFYGFSLKQLLDDVMLVRFVDETEDGTNIIRNGIVVPVNVDTKAWRIGEVILAGPNTKHAKPKDYVCFPNNLGVPVANISVDGYGTLKKGIFLNEQRIFGICSVINDNNSVAAHTTKKRKNSE*
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