Scaffold Ga0114963_10000007

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114963_10000007

Scaffold Ga0114963_10000007

Overview

Basic Information
Taxon OID	3300009154 Open in IMG/M
Scaffold ID	Ga0114963_10000007 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	133136
Total Scaffold Genes	167 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (24.55%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016038	Metagenome / Metatranscriptome	250	Y
F052416	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_10000007118	F052416	N/A	MDIIEPKIIVSPISGQPVKPRLKTYIREGKEIVEAEYIDPASGAFIRKGVVSVRDIEKK*
Ga0114963_1000000754	F016038	N/A	MPIDIDVLPTQKSLLDLSELPKNTFNSVFYGYNLKALLDDILLVQYMDETSDGTSIVRNGIVIPINADTKAWRIGEVVLCGPNAKYVKKGDYVCFPNNLGVPVANLDIDGFGTLKKGLFLNEQRIFGICSLRKDDESVASHIKKSSSKQRGGN*

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