| Basic Information | |
|---|---|
| Taxon OID | 3300009152 Open in IMG/M |
| Scaffold ID | Ga0114980_10037722 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2966 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001561 | Metagenome / Metatranscriptome | 670 | Y |
| F008552 | Metagenome | 331 | Y |
| F009750 | Metagenome | 313 | Y |
| F024557 | Metagenome | 205 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114980_100377222 | F008552 | N/A | LIKKNLQLCPRDGRYHPYKFFAIFFILENPTITRYNMSVMIISFEASASIDTTLFGYFSMEYDPEFFSDIKENLTDIPKSKPLAFKLDTDNVKLLQGAFHNIRRIICIPDVEKNKFTYVFKRNFESGTTKQFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDARFIDTIQNQFIKHQENMVN* |
| Ga0114980_100377223 | F024557 | N/A | MEPTVWIYFSKTGTGYELKGSDVISGFDAFINMDGTYMVEYAFSDMKSSMHFFIYEWDNSQKKRRTVFESYKKELVLMGMVKHIDKIPLPITQKILSMYVNDAEELELEKNANS* |
| Ga0114980_100377224 | F001561 | GGAG | MQTREQKLVYLRKTIETLWHGVSDSKTGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAVNNKDTVWLFQAEKFAKRYLSLNSNGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDAPSSTHHSLISVCEKSGDKIRAIGYCKMTLARFPNDPYTKSKLEVLTKL* |
| Ga0114980_100377225 | F009750 | AGG | MLKYAIFETSQTMKEIITAIYQNGKFKDNKILKPHLTDRIGIRMTFPEGAECILWTNGKKYYAVCEAFGTIFTVSIPRNLGDDIWDRFKTEFEGNYSYNSF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |