Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10007716 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10007716 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7051
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7051

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002044	Metagenome / Metatranscriptome	599	Y
F002162	Metagenome / Metatranscriptome	588	Y
F004599	Metagenome / Metatranscriptome	431	N
F006539	Metagenome / Metatranscriptome	370	Y
F007469	Metagenome / Metatranscriptome	350	Y
F042333	Metagenome	158	Y
F046377	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100077161	F002044	N/A	SNNFPMANTRKPIKRKKINRRVVRQTPDPTKIDAHYIALHECYKAARKAGFTPEHAFWLMTEHKTFPDWVVGDGGIIPSIDPTDDEDDD*
Ga0114980_100077163	F046377	AGG	MYSQMVCGYVGSDMKIQIDLKAADFEQLWINSMEWMNNDWQKQADRFDPSPLFSWGYAYWFDNYAALKMAEGFLSSLGKNYATHSDENTGDWLILTNYASPCHLRKKLVNA*
Ga0114980_100077164	F006539	N/A	MIETTTGWLVLYSVLGYFIVWGIFSTIKENYGQTMYWRGRKDGYDMHRRITDAKRDQVFDYDKQN*
Ga0114980_100077166	F004599	GGAG	MMAFNLSEYEDVATLNKWFILNFPSGRSDISVISHDAVNGYILVQATLWRDSKDEQPCVSNIAFGSRESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESEPIKNIYGKSGNSQIIEMALRKSFADDAKPTSEPTTWTVGDVAEALSTKPKQQECSHGLMILKEGTAKTGRPFYGYVCSAPKGQQCDAKWAVTAANGSWFFREEE*
Ga0114980_100077167	F007469	AGGAGG	MGKMIMIDGSGLTATFTDNGVIVEPSTIVCDTCNDDRLLHEGDLLRCYSCHSINRIP*
Ga0114980_100077168	F002162	GAGG	MLFLSFNQSDSIVPNYEYACDREGSSIVLDLPMQHEIPFCQVCGFELTRVFTAVPAIFKGTGWAGKSGQV*
Ga0114980_100077169	F042333	GAG	MDGYDTADGFRVYQCLKCCAIGTKNLAEATDTQEPVQRCDQYGHWMFVDQPCHSCLLIASK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10007716

Overview

Ecosystem & Geography

Associated Families

Sequences