NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10004906

Scaffold Ga0114980_10004906


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10004906 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8953
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004010Metagenome / Metatranscriptome457Y
F039527Metagenome / Metatranscriptome163N
F056556Metagenome137N
F068578Metagenome / Metatranscriptome124N
F083891Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0114980_100049061F083891GAGGVSRAVECPHCRQEVPVALFASRIGKVRSEAKAKASIANGKKGGAPKGNRNWAGKELQVASFRPIKLD*
Ga0114980_1000490611F004010AGGAMPSGKNVSKNMRELMKDNKKKGKERGAGGKARSFEQMVAIALNAAGKSKNR*
Ga0114980_1000490617F056556AGAAGMEESSKRWDANLVVIKPEKPIGLLAKMSLVDAVQNADRTLFVDSDVLISRECVNPFETFPQGHFYACADAPHGDQLHWGRANEMILSQALLGSVKWTQGYFNTGVMVCDKQHAGAWANFVYAPFAFPEQTFTNYRARMLGYSVRFLSWEWNAMEINTPKDKKQSDGFMPHAAGIYGDARAKWIEEMDKVLP*
Ga0114980_100049062F039527GGAGGMNNYDDREEGALTFEQMVPGKYYRYNRDYGICEIMESASNRPKVLRYLNRGGGLLGGNGDLFEIDMTDRLLAVLKERRDKQIEFIDEMRTW*
Ga0114980_1000490621F068578GGAMESIMEAIDSLGTAVRELQEGLPVKDHTGPTIEDVATYASGVIRKIMNRGSNKSRFGEWFHKNSLRYNSDRAIAHMTRAMQQIDGNVSSPDGLGETCIDHLERALVRAVFTLYKAKEGKIR*
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