| Basic Information | |
|---|---|
| Taxon OID | 3300009152 Open in IMG/M |
| Scaffold ID | Ga0114980_10004047 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9942 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (87.50%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003049 | Metagenome | 510 | Y |
| F005584 | Metagenome | 395 | Y |
| F006138 | Metagenome / Metatranscriptome | 380 | Y |
| F008741 | Metagenome | 328 | Y |
| F009142 | Metagenome | 322 | Y |
| F030060 | Metagenome | 186 | N |
| F035218 | Metagenome / Metatranscriptome | 172 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114980_1000404711 | F009142 | AGGA | MNNSVQINVEDALENLLANIPNLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISKEDFDATYCQIFEAFYEETPPLFTKIQNNILDTKVYTARITSQTPTIRTAKRAWQRGLRISLICTPSELDDGLRFLDFSEQRNSMYVGVI* |
| Ga0114980_1000404713 | F035218 | AGGAG | MPLVKNPSNIDNFLFASGRMKMYRVGLAGSYTKTTGAAGVATFANTGGFQINLNAGSAANGTSKVGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYLASTNSVIRMVFGGTGNATDAPLAGVDGLTIKGFGAEFALQSGVIQARLIGFNSAYLTPTSYTTLTNGFGLASSDNRFFGVVIESDGAGNIYLYGADSQTNPAINIGQTPLLTLTGGPTNDTSTNRFGPEIHCSNSSSLPTSSPSAILQSTHWLLDVQ* |
| Ga0114980_1000404716 | F006138 | GAGG | MAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNSGDIVAIGYFNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS* |
| Ga0114980_100040474 | F003049 | AGGA | MKNAKPIIGCRKTKKGEDTKGLGIIKFGKSHPDPTKYVKVDITYDEKAEKDLYECGMIALKHDKEAVIQYVIVKALTGYAKCKK* |
| Ga0114980_100040476 | F030060 | GGCGG | MTKGIITSESPEIHWEHLNVAGGRLLDLGCAFWTETERQEANGTTKYFLSQKPEFYMGVDMNQGDIQTLSQQYPQGKFLCEKADSAPQMNTWIKENSITHIKCDIEGDETQLLQIGNVHNLKEITIELHYSDTWLKEFMAWFDSIGFECYRHDSVSFCPEISVIYGRLKC* |
| Ga0114980_100040478 | F008741 | GAG | MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLAQYHGVFELTSYVKAGHRQGDIIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPESYNLVAPFGLSQGHYRNPLELIVRARQTMGKDNFFVLCPADIKIQGLNTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKNEWETDNIFSFEGMTSMD* |
| Ga0114980_100040479 | F005584 | AGGTGG | MAGSIPTSYFATDLTYMIQDLYQSVTGLGSTSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |