Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10003282 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10003282 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11139
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (62.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11139

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (62.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002044	Metagenome / Metatranscriptome	599	Y
F002162	Metagenome / Metatranscriptome	588	Y
F007469	Metagenome / Metatranscriptome	350	Y
F020681	Metagenome / Metatranscriptome	222	Y
F105165	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000328215	F002044	N/A	MANTRKPIKRKKINRRVVRHSPEPLSKIDQHYMALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEEND*
Ga0114980_1000328217	F105165	AGG	MYAQIACVYVGSDMTAKTDMLQLAWILLGLGTITWIIHEIKETAFQNGYWKGREAGWQSHRRLINTKVQSDEVFDYDKN*
Ga0114980_1000328220	F007469	AGGAGG	MGYVEIIDGSGLMATIENDAIKVEPTTIVCDMCNDDRLLHEGDLFQCYSCHAINRIP*
Ga0114980_1000328221	F002162	GGA	MPNYEYECDREGLSIILDLPMGHKIPLCQVCGFELNRVYTAIPAIFKGSGWAGKR*
Ga0114980_1000328222	F020681	AGG	MKFKCNGCSRKTEFIWLDQFNTAEGFRVYQCKDCGCVGTKNLAEATDTQEPVIRCTKCGSWQFVDQVCHTCELIATKEQA*
Ga0114980_100032828	F000468	AGAAG	MTQFTPDWKLTVSGTEYTDITISDITHASGRSDIYSQPNPSFIQITLVALSGQTLPFDLNDSLALEVKNTSGTYIPLFGGNITDVTAEVGATGSIATVVNYTLIAMGNLASLAKIITNGILSQDEDGDQIYDLLSSVLLGTWNDVPAASTWSGYSATETWLQAVNLGLGEIDQPGLYVMENRDSSPDTIYNIASYIANSAFGYLYEDNQGNIGYADADHRQTYLLDNGYTEISANHALAQGIRASIRSGDIRNDIYINYGNNFGSQKTATDLTSIATYGYKGETIQSLIHSATDAQEIADKYITLRAYPYPSFDSITFPITNPEMDDADRDALLGIFMGQPIHITNLPSQIQNGSFEGYVEGWSWSTGFNELFLTINLSPVNFSQVAMRWNTVPVGEAWNTISATIDWANANIIA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10003282

Overview

Ecosystem & Geography

Associated Families

Sequences