NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10002957

Scaffold Ga0114980_10002957


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10002957 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11817
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F005701Metagenome / Metatranscriptome392Y
F026201Metagenome / Metatranscriptome198Y
F034569Metagenome / Metatranscriptome174Y
F064710Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1000295717F005701AGGAMFTQCIAYAKLVYNKKLNAYKVQIAFNVHKKLVGTNYKYSFPVQSKCNYVSGDLLAEDLQNEVQRTVAYAQQNLRTTQIVFVE*
Ga0114980_1000295718F026201AGGAGMQNIKQYITEAEDGYNLCITLDNEQCAGVAVESITMFISNVNEAEDGEDAMYFNGDLAVNYNIDALQNDETAQTMGTLLLRNIHSEDEVTAVMGQFYWEGAFTARLNAILAERGFTANTAHTSEWGMQDEGRASYDACELADEIRAIMQTATA*
Ga0114980_1000295722F064710N/AMQEAITTKDKLTSLMLQMQEIIMQDYEDNEDIQNAFNALASAYDYYVED*
Ga0114980_1000295726F034569N/AMNKTNELIQWAGTAFILAMYVISNFFPGLDDLRNAVALVGAGCFFAWSYRVANRQQMIINGVAIVLCVVGLLRVVG*
Ga0114980_1000295727F000354AGGAGMTKVNYDRFASFDINECCDHFDSEKQSNWKKIGKFIVADGQEYAHIMETEFDFEDVGSGEYEAFAAGVKYALTKMNIAFEAAALDLQVCEVDLVESMGYVMVRADDEPEDFVKRVLKKPVLMVESWID*
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